Exon is an execution engine designed to work with bioinformatics data. It features:

• SQL based access to bioinformatics data -- general DML and some DDL support
• Support for many file formats from bioinformatics, proteomics, and others
• Local filesystem and object storage support
• Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

• Rust documentation is available here.
• General documentation is available here.

Related Projects

• Exon R Bindings
• BioBear

Benchmarks

Please see the benchmarks README for more information.

lib.rs:

Crate to support reading FASTA files into Arrow arrays.

Part of the Exon project. See the Exon documentation for more information.